Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10516713	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13106357	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13141607	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17007945	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17008090	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17008099	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17008102	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17008106	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2222863	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28438793	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34326696	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34540292	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34915778	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35729989	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35811087	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60422578	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60645724	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67031574	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67405482	0.85[EUR][1000 genomes]
rs6811978	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6815059	0.83[EUR][1000 genomes]
rs6853746	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7669239	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7699307	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17007935	CREG1	trans	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84979000-84980400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:84979600-84981800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:84980200-84980800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:84980200-84981000	Enhancers	H9 Cell Line	embryonic stem cell

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