Variant report

Variant	rs35729989
Chromosome Location	chr4:85048099-85048100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10516713	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13106357	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13141607	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17007935	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17007945	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17008090	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17008099	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17008102	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17008106	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2222863	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28438793	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34326696	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34540292	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34915778	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35811087	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60422578	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60645724	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67031574	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67405482	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6811978	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6815059	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6853746	0.87[EUR][1000 genomes]
rs7669239	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7699307	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv508294	chr4:85035979-85073816	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85047200-85048400	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr4:85047600-85048400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr4:85047600-85048400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr4:85047600-85048400	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr4:85047600-85048400	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr4:85047600-85048400	Active TSS	K562	blood
7	chr4:85047800-85048400	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr4:85047800-85048400	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr4:85047800-85048400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:85047800-85048400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:85047800-85048400	Active TSS	NHEK	skin
12	chr4:85048000-85048200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
13	chr4:85048000-85048400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:85048000-85048400	Active TSS	H9 Cell Line	embryonic stem cell
15	chr4:85048000-85048400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:85048000-85048400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:85048000-85048400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:85048000-85048400	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr4:85048000-85048400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr4:85048000-85048400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr4:85048000-85048400	Active TSS	Colonic Mucosa	Colon
22	chr4:85048000-85048400	Active TSS	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links