Variant report

Variant	rs6815059
Chromosome Location	chr4:85080436-85080437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85071031..85073190-chr4:85079864..85082804,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10516713	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13106357	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13141607	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17007935	0.83[EUR][1000 genomes]
rs17007945	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17008090	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17008099	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17008102	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17008106	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2222863	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28438793	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34326696	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34540292	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34915778	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35729989	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35811087	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4693675	0.89[AFR][1000 genomes]
rs60422578	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60645724	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67031574	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67405482	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6811978	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6853746	0.83[EUR][1000 genomes]
rs7669239	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7699307	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv524354	chr4:85006975-85215142	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv829996	chr4:85016673-85173300	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879514	chr4:85057124-85272572	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1012379	chr4:85071268-85205732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85079800-85081200	Bivalent Enhancer	Fetal Lung	lung
2	chr4:85080200-85080600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr4:85080400-85080600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:85080400-85080600	Flanking Active TSS	Duodenum Mucosa	Duodenum
5	chr4:85080400-85080600	Flanking Active TSS	Fetal Intestine Large	intestine
6	chr4:85080400-85084000	Enhancers	Fetal Intestine Small	intestine

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