Variant report

Variant	rs17008531
Chromosome Location	chr4:120914789-120914790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17008198	1.00[AMR][1000 genomes]
rs57577102	1.00[AMR][1000 genomes]
rs73842754	1.00[AMR][1000 genomes]
rs73842774	1.00[AMR][1000 genomes]
rs73842776	1.00[AMR][1000 genomes]
rs73842777	1.00[AMR][1000 genomes]
rs73842778	1.00[AMR][1000 genomes]
rs73842781	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv879849	chr4:120823634-120922444	Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv879850	chr4:120898509-120969089	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120912400-120915200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:120914000-120917200	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr4:120914000-120921800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:120914400-120914800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr4:120914600-120914800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr4:120914600-120914800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr4:120914600-120917200	Active TSS	H1 Cell Line	embryonic stem cell
8	chr4:120914600-120917200	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr4:120914600-120918400	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr4:120914600-120918400	Active TSS	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links