Variant report

Variant	rs73842778
Chromosome Location	chr4:120882364-120882365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17008198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17008531	1.00[AMR][1000 genomes]
rs57577102	1.00[AMR][1000 genomes]
rs72684581	0.90[AFR][1000 genomes]
rs72684584	0.90[AFR][1000 genomes]
rs73842754	1.00[AMR][1000 genomes]
rs73842774	1.00[AMR][1000 genomes]
rs73842776	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73842777	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73842781	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv879849	chr4:120823634-120922444	Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120881600-120883200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr4:120882200-120882600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:120882200-120883200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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