Variant report

Variant	rs57577102
Chromosome Location	chr4:120859699-120859700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17008198	1.00[AMR][1000 genomes]
rs17008531	1.00[AMR][1000 genomes]
rs73842754	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73842755	0.81[AFR][1000 genomes]
rs73842774	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73842776	1.00[AMR][1000 genomes]
rs73842777	1.00[AMR][1000 genomes]
rs73842778	1.00[AMR][1000 genomes]
rs73842781	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv879849	chr4:120823634-120922444	Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120859200-120859800	Enhancers	Aorta	Aorta
2	chr4:120859200-120860400	Enhancers	Fetal Heart	heart
3	chr4:120859400-120861400	Enhancers	Osteobl	bone
4	chr4:120859600-120860000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:120859600-120861000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:120859600-120861000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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