Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13317408	1.00[EUR][1000 genomes]
rs17008685	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2196440	1.00[EUR][1000 genomes]
rs59030260	1.00[EUR][1000 genomes]
rs59308734	1.00[EUR][1000 genomes]
rs60720460	1.00[EUR][1000 genomes]
rs6781161	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73819013	1.00[EUR][1000 genomes]
rs73819018	1.00[EUR][1000 genomes]
rs73819025	1.00[EUR][1000 genomes]
rs73819921	1.00[EUR][1000 genomes]
rs73820004	1.00[EUR][1000 genomes]
rs73820199	1.00[EUR][1000 genomes]
rs73820939	1.00[EUR][1000 genomes]
rs73820942	1.00[EUR][1000 genomes]
rs73820944	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7619922	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9829608	1.00[EUR][1000 genomes]
rs9831471	1.00[EUR][1000 genomes]
rs9854332	1.00[EUR][1000 genomes]
rs9877941	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834630	chr3:21311619-21491327	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1000828	chr3:21399870-21565580	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv536515	chr3:21399870-21565580	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21458800-21483400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:21463000-21491400	Weak transcription	Aorta	Aorta
3	chr3:21477000-21491200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:21477000-21507200	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:21477400-21488600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:21477600-21478800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:21477800-21480000	Weak transcription	Fetal Lung	lung
8	chr3:21477800-21487600	Weak transcription	Fetal Stomach	stomach
9	chr3:21478400-21478800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:21478400-21478800	Active TSS	Brain Anterior Caudate	brain
11	chr3:21478400-21478800	Enhancers	Fetal Kidney	kidney
12	chr3:21478400-21488400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:21478600-21478800	Active TSS	Brain Hippocampus Middle	brain
14	chr3:21478600-21479000	Active TSS	Brain Germinal Matrix	brain

Quick Search: