Variant report

Variant	rs59308734
Chromosome Location	chr3:21466668-21466669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21466338..21470140-chr3:21472004..21475648,4	K562	blood:

Variant related genes	Relation type
ENSG00000151789	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13317408	1.00[EUR][1000 genomes]
rs17008685	1.00[EUR][1000 genomes]
rs17008726	1.00[EUR][1000 genomes]
rs2196440	1.00[EUR][1000 genomes]
rs59030260	1.00[EUR][1000 genomes]
rs60720460	1.00[EUR][1000 genomes]
rs6781161	1.00[EUR][1000 genomes]
rs73819013	1.00[EUR][1000 genomes]
rs73819018	1.00[EUR][1000 genomes]
rs73819025	1.00[EUR][1000 genomes]
rs73819921	1.00[EUR][1000 genomes]
rs73820004	1.00[EUR][1000 genomes]
rs73820199	1.00[EUR][1000 genomes]
rs73820939	1.00[EUR][1000 genomes]
rs73820942	1.00[EUR][1000 genomes]
rs73820944	1.00[EUR][1000 genomes]
rs7619922	1.00[EUR][1000 genomes]
rs9829608	1.00[EUR][1000 genomes]
rs9831471	1.00[EUR][1000 genomes]
rs9854332	1.00[EUR][1000 genomes]
rs9877941	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834630	chr3:21311619-21491327	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1011516	chr3:21337788-21472093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1000828	chr3:21399870-21565580	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536515	chr3:21399870-21565580	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21453200-21475600	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:21455000-21469000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:21458800-21483400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:21459200-21477200	Weak transcription	Fetal Lung	lung
5	chr3:21460200-21474800	Weak transcription	NHDF-Ad	bronchial
6	chr3:21461400-21468400	Weak transcription	Fetal Stomach	stomach
7	chr3:21463000-21491400	Weak transcription	Aorta	Aorta
8	chr3:21466600-21467800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links