Variant report
Variant | rs17009905 |
---|---|
Chromosome Location | chr3:21921111-21921112 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:21919005..21921576-chr3:21924260..21925811,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11712427 | 0.90[ASN][1000 genomes] |
rs11713712 | 0.89[EUR][1000 genomes] |
rs12485261 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs13091892 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs17009918 | 0.86[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs17010054 | 0.85[ASN][1000 genomes] |
rs17010055 | 0.85[ASN][1000 genomes] |
rs17010073 | 0.85[ASN][1000 genomes] |
rs17010081 | 0.82[ASN][1000 genomes] |
rs2336513 | 0.86[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs259484 | 0.86[ASN][1000 genomes] |
rs3890082 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3890083 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3912211 | 0.86[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs73040559 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs73040587 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9812511 | 0.85[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv534005 | chr3:21387588-22003293 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | esv2751992 | chr3:21786893-22212357 | Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv948555 | chr3:21786893-22212357 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv834632 | chr3:21803941-21974082 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv1003085 | chr3:21887971-22415107 | Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | nsv834633 | chr3:21918264-22088338 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
7 | nsv876614 | chr3:21919039-21994022 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:21920400-21923000 | Enhancers | Fetal Lung | lung |
2 | chr3:21920800-21921200 | Enhancers | Fetal Kidney | kidney |