Variant report

Variant	rs3912211
Chromosome Location	chr3:21923732-21923733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21922639..21924964-chr3:21928274..21929966,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10510519	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11708742	1.00[AFR][1000 genomes]
rs11712427	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11714027	1.00[AFR][1000 genomes]
rs11714758	1.00[AFR][1000 genomes]
rs12485261	0.93[AMR][1000 genomes]
rs12485586	1.00[AFR][1000 genomes]
rs12492135	1.00[AFR][1000 genomes]
rs13091892	0.80[ASN][1000 genomes]
rs17009905	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17009918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17009967	0.90[EUR][1000 genomes]
rs17010054	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17010055	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17010073	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17010081	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2336513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2336516	1.00[AFR][1000 genomes]
rs259484	0.93[ASN][1000 genomes]
rs259527	0.85[ASN][1000 genomes]
rs34256295	1.00[AFR][1000 genomes]
rs35063591	1.00[AFR][1000 genomes]
rs35225619	1.00[AFR][1000 genomes]
rs35828697	1.00[AFR][1000 genomes]
rs3849560	0.90[EUR][1000 genomes]
rs3890082	0.92[ASN][1000 genomes]
rs3890083	0.92[ASN][1000 genomes]
rs3900200	0.90[EUR][1000 genomes]
rs4089560	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5003417	0.90[EUR][1000 genomes]
rs61311503	1.00[AFR][1000 genomes]
rs73040559	0.93[AMR][1000 genomes]
rs73040587	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73040601	1.00[AFR][1000 genomes]
rs9812511	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2751992	chr3:21786893-22212357	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv948555	chr3:21786893-22212357	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv834632	chr3:21803941-21974082	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1003085	chr3:21887971-22415107	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv834633	chr3:21918264-22088338	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv876614	chr3:21919039-21994022	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv998906	chr3:21921707-21962293	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21922000-21927800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:21923600-21923800	Enhancers	Fetal Lung	lung

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