Variant report

Variant	rs17010400
Chromosome Location	chr2:31083757-31083758
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12105915	1.00[MEX][hapmap]
rs1520320	1.00[EUR][1000 genomes]
rs17010291	1.00[EUR][1000 genomes]
rs17010520	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2364443	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs58134239	1.00[EUR][1000 genomes]
rs61192561	1.00[EUR][1000 genomes]
rs72867186	1.00[EUR][1000 genomes]
rs73921200	1.00[EUR][1000 genomes]
rs73921202	1.00[EUR][1000 genomes]
rs73922696	1.00[EUR][1000 genomes]
rs73923305	1.00[EUR][1000 genomes]
rs73923309	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833659	chr2:31020572-31171505	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31082400-31083800	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr2:31082400-31085000	Enhancers	Brain Cingulate Gyrus	brain
3	chr2:31082800-31084000	Enhancers	Brain Anterior Caudate	brain
4	chr2:31082800-31085000	Enhancers	Fetal Brain Male	brain
5	chr2:31083000-31084400	Enhancers	Brain Germinal Matrix	brain
6	chr2:31083000-31085000	Enhancers	Brain Hippocampus Middle	brain
7	chr2:31083000-31085000	Enhancers	Brain Substantia Nigra	brain
8	chr2:31083000-31085000	Enhancers	Fetal Lung	lung
9	chr2:31083000-31088800	Weak transcription	Brain Angular Gyrus	brain
10	chr2:31083200-31087600	Weak transcription	Dnd41	blood
11	chr2:31083400-31085200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr2:31083400-31088200	Weak transcription	Fetal Thymus	thymus
13	chr2:31083600-31084000	Weak transcription	Fetal Brain Female	brain
14	chr2:31083600-31088600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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