Variant report

Variant	rs73923309
Chromosome Location	chr2:31174598-31174599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1520320	1.00[EUR][1000 genomes]
rs17010291	1.00[EUR][1000 genomes]
rs17010400	1.00[EUR][1000 genomes]
rs17010520	1.00[EUR][1000 genomes]
rs2364443	1.00[EUR][1000 genomes]
rs58134239	1.00[EUR][1000 genomes]
rs61192561	1.00[EUR][1000 genomes]
rs72867186	1.00[EUR][1000 genomes]
rs73921200	1.00[EUR][1000 genomes]
rs73921202	1.00[EUR][1000 genomes]
rs73922696	1.00[EUR][1000 genomes]
rs73923305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31122800-31191400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:31145000-31179800	Weak transcription	Esophagus	oesophagus
3	chr2:31147600-31213000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:31152400-31191600	Weak transcription	HMEC	breast
5	chr2:31156000-31221400	Weak transcription	Pancreas	Pancrea
6	chr2:31162600-31176600	Weak transcription	Fetal Brain Male	brain
7	chr2:31167800-31180200	Weak transcription	NHEK	skin
8	chr2:31169400-31186600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:31171000-31178200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:31171400-31175000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:31172000-31178200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr2:31172000-31191200	Weak transcription	A549	lung
13	chr2:31172600-31176000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr2:31172600-31178200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:31172600-31180400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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