Variant report

Variant	rs73921200
Chromosome Location	chr2:31160872-31160873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:31116615..31118506-chr2:31160122..31162947,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1520320	1.00[EUR][1000 genomes]
rs17010291	1.00[EUR][1000 genomes]
rs17010400	1.00[EUR][1000 genomes]
rs17010520	1.00[EUR][1000 genomes]
rs2364443	1.00[EUR][1000 genomes]
rs58134239	1.00[EUR][1000 genomes]
rs61192561	1.00[EUR][1000 genomes]
rs72867186	1.00[EUR][1000 genomes]
rs73921202	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73922696	1.00[EUR][1000 genomes]
rs73923305	1.00[EUR][1000 genomes]
rs73923309	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833659	chr2:31020572-31171505	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31122800-31191400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:31145000-31179800	Weak transcription	Esophagus	oesophagus
3	chr2:31147000-31171000	Weak transcription	A549	lung
4	chr2:31147600-31213000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:31147800-31161000	Weak transcription	Brain Germinal Matrix	brain
6	chr2:31152200-31167400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:31152400-31171200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:31152400-31173400	Weak transcription	Fetal Brain Female	brain
9	chr2:31152400-31191600	Weak transcription	HMEC	breast
10	chr2:31154800-31171200	Weak transcription	Primary B cells from cord blood	blood
11	chr2:31156000-31221400	Weak transcription	Pancreas	Pancrea
12	chr2:31156200-31170400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr2:31157200-31170800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:31159000-31162600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:31159600-31162400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr2:31159600-31162600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr2:31159600-31162800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr2:31159800-31161800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr2:31159800-31162600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr2:31159800-31162600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:31159800-31162800	Enhancers	H1 Cell Line	embryonic stem cell
22	chr2:31159800-31170600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr2:31160200-31162400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr2:31160400-31161600	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr2:31160400-31162600	Enhancers	Fetal Brain Male	brain
26	chr2:31160600-31161600	Enhancers	Fetal Thymus	thymus
27	chr2:31160600-31162000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr2:31160600-31162000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr2:31160600-31162400	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr2:31160600-31167000	Weak transcription	NHEK	skin
31	chr2:31160800-31161000	Enhancers	Lung	lung
32	chr2:31160800-31161600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr2:31160800-31162000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr2:31160800-31163800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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