Variant report
| Variant | rs17011859 |
|---|---|
| Chromosome Location | chr2:125441693-125441694 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr2:125441596-125441994 | H1-neurons | neurons: | n/a | n/a |
| 2 | POLR2A | chr2:125441583-125442013 | H1-neurons | neurons: | n/a | n/a |
| 3 | MAFK | chr2:125440868-125441952 | IMR90 | lung: | n/a | chr2:125441894-125441908 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MTND5P22 | TF binding region |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10189889 | 1.00[CEU][hapmap] |
| rs13405693 | 1.00[CEU][hapmap] |
| rs1454138 | 0.93[AFR][1000 genomes] |
| rs1454139 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1504016 | 0.88[EUR][1000 genomes] |
| rs17011851 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17011865 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59167655 | 0.82[EUR][1000 genomes] |
| rs66820110 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72841384 | 0.88[EUR][1000 genomes] |
| rs72841386 | 0.88[EUR][1000 genomes] |
| rs72841388 | 0.88[EUR][1000 genomes] |
| rs72841390 | 0.88[EUR][1000 genomes] |
| rs72845015 | 0.88[EUR][1000 genomes] |
| rs72845026 | 0.88[EUR][1000 genomes] |
| rs72845059 | 1.00[EUR][1000 genomes] |
| rs72845077 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72845078 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72845079 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72845081 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72845873 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72845874 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72845877 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72845878 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72845884 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72976467 | 0.93[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834359 | chr2:125367872-125536022 | Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv428727 | chr2:125372897-125512949 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:125439800-125442600 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
