Variant report

Variant	rs72845077
Chromosome Location	chr2:125433552-125433553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1454139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1504016	0.88[EUR][1000 genomes]
rs17011851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17011865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59167655	0.82[EUR][1000 genomes]
rs66820110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72841382	1.00[AFR][1000 genomes]
rs72841384	0.88[EUR][1000 genomes]
rs72841386	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72841388	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72841390	0.88[EUR][1000 genomes]
rs72845015	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72845026	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72845059	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72845078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72845079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72845081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72845253	1.00[AFR][1000 genomes]
rs72845255	1.00[AFR][1000 genomes]
rs72845873	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72845874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72845877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72845878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72845884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72845901	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv428727	chr2:125372897-125512949	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125433200-125434200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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