Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1504016	0.89[EUR][1000 genomes]
rs59167655	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72841384	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72841386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72841388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72841390	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72845059	1.00[AFR][1000 genomes]
rs72845077	1.00[AFR][1000 genomes]
rs72845078	1.00[AFR][1000 genomes]
rs72845079	1.00[AFR][1000 genomes]
rs72845081	1.00[AFR][1000 genomes]
rs72845253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72845255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72845257	1.00[AMR][1000 genomes]
rs72845873	1.00[AFR][1000 genomes]
rs72845874	1.00[AFR][1000 genomes]
rs72845877	1.00[AFR][1000 genomes]
rs72845878	1.00[AFR][1000 genomes]
rs72845884	1.00[AFR][1000 genomes]
rs72845901	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv528674	chr2:125346337-125383522	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125365600-125366600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:125366400-125367000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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