Variant report

Variant	rs1504016
Chromosome Location	chr2:125368982-125368983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1117337	0.85[AFR][1000 genomes]
rs1454139	0.88[EUR][1000 genomes]
rs17011851	0.88[EUR][1000 genomes]
rs17011859	0.88[EUR][1000 genomes]
rs17011865	0.88[EUR][1000 genomes]
rs1910529	0.87[YRI][hapmap]
rs59167655	0.94[EUR][1000 genomes]
rs66820110	0.88[EUR][1000 genomes]
rs72841382	0.89[EUR][1000 genomes]
rs72841384	1.00[EUR][1000 genomes]
rs72841386	1.00[EUR][1000 genomes]
rs72841388	1.00[EUR][1000 genomes]
rs72841390	1.00[EUR][1000 genomes]
rs72845015	1.00[EUR][1000 genomes]
rs72845026	1.00[EUR][1000 genomes]
rs72845059	0.88[EUR][1000 genomes]
rs72845077	0.88[EUR][1000 genomes]
rs72845078	0.88[EUR][1000 genomes]
rs72845079	0.88[EUR][1000 genomes]
rs72845081	0.88[EUR][1000 genomes]
rs72845873	0.82[EUR][1000 genomes]
rs72845874	0.88[EUR][1000 genomes]
rs72845877	0.88[EUR][1000 genomes]
rs72845878	0.88[EUR][1000 genomes]
rs72845884	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv528674	chr2:125346337-125383522	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125367000-125369400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:125367200-125369200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr2:125367200-125369600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr2:125367200-125369800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:125367200-125370200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:125367200-125370200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr2:125367200-125370200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:125367400-125369600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr2:125367600-125369000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr2:125367600-125369600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr2:125368000-125369000	Weak transcription	Brain Germinal Matrix	brain
12	chr2:125368600-125369000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:125368600-125369400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:125368800-125369600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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