Variant report

Variant	rs17012428
Chromosome Location	chr2:76499619-76499620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10865419	0.95[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11887752	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12615757	0.95[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12616451	0.80[ASN][1000 genomes]
rs12622814	0.81[ASN][1000 genomes]
rs1526624	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1526644	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17012424	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17012430	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17012485	0.94[ASN][1000 genomes]
rs4852400	0.94[ASN][1000 genomes]
rs58987310	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874312	chr2:76430941-76500077	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76492400-76505200	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:76495400-76503600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:76496600-76503800	Enhancers	Hela-S3	cervix
4	chr2:76497600-76503800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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