Variant report

Variant	rs17012485
Chromosome Location	chr2:76535759-76535760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10865419	0.91[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs11887752	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12615757	0.82[ASW][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs12616451	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12622814	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1526624	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1526644	0.86[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.91[ASN][1000 genomes]
rs17012424	0.93[ASN][1000 genomes]
rs17012428	0.94[ASN][1000 genomes]
rs17012430	0.94[ASN][1000 genomes]
rs4852400	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58987310	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006097	chr2:76524248-76675427	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76533600-76536800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:76535400-76536200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:76535600-76536200	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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