Variant report

Variant	rs17012525
Chromosome Location	chr4:128497363-128497364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10005550	0.99[ASN][1000 genomes]
rs10212983	0.98[ASN][1000 genomes]
rs10493145	0.86[EUR][1000 genomes]
rs10493146	0.91[EUR][1000 genomes]
rs11728212	0.98[ASN][1000 genomes]
rs11935472	0.86[EUR][1000 genomes]
rs11937218	0.88[ASN][1000 genomes]
rs12499018	0.88[ASN][1000 genomes]
rs12502458	0.87[ASN][1000 genomes]
rs12505420	0.81[ASN][1000 genomes]
rs12505574	0.88[ASN][1000 genomes]
rs12506112	0.81[ASN][1000 genomes]
rs12506317	0.88[ASN][1000 genomes]
rs12508021	0.87[ASN][1000 genomes]
rs12513002	0.88[ASN][1000 genomes]
rs12513073	0.88[ASN][1000 genomes]
rs12513077	0.88[ASN][1000 genomes]
rs12641215	0.85[JPT][hapmap]
rs12644377	0.85[JPT][hapmap]
rs1355927	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1380155	0.82[EUR][1000 genomes]
rs1514312	0.99[ASN][1000 genomes]
rs1514313	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1514314	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1514315	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17012484	0.87[ASN][1000 genomes]
rs17012500	0.88[ASN][1000 genomes]
rs17012503	0.87[ASN][1000 genomes]
rs17012586	1.00[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17012601	1.00[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs17012634	0.91[EUR][1000 genomes]
rs17012654	0.91[EUR][1000 genomes]
rs17012683	0.82[EUR][1000 genomes]
rs17012710	0.82[EUR][1000 genomes]
rs1824332	1.00[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs1841157	0.82[EUR][1000 genomes]
rs1903106	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2002543	0.85[JPT][hapmap]
rs2007243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090103	0.85[JPT][hapmap]
rs2276980	0.91[EUR][1000 genomes]
rs2279071	1.00[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2391185	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28570426	0.86[EUR][1000 genomes]
rs2893227	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3214037	1.00[CEU][hapmap]
rs35147318	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35858752	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4422427	0.82[EUR][1000 genomes]
rs4590052	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56077955	0.88[ASN][1000 genomes]
rs56763029	0.91[EUR][1000 genomes]
rs57872398	0.86[ASN][1000 genomes]
rs58486324	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59695248	0.87[ASN][1000 genomes]
rs60404814	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60553863	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60666303	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60803593	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61143634	0.88[ASN][1000 genomes]
rs6815196	0.85[JPT][hapmap]
rs72616920	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616921	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616922	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616923	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616924	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616925	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616926	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616927	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616928	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616929	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616930	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616931	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616932	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616933	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616934	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616935	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616936	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616937	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616938	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616939	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616940	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616941	0.91[EUR][1000 genomes]
rs72616942	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616943	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72616947	0.91[EUR][1000 genomes]
rs72616948	0.91[EUR][1000 genomes]
rs72616949	0.91[EUR][1000 genomes]
rs72616950	0.91[EUR][1000 genomes]
rs72616951	0.86[EUR][1000 genomes]
rs72616952	0.82[EUR][1000 genomes]
rs72616953	0.82[EUR][1000 genomes]
rs72616956	0.82[EUR][1000 genomes]
rs72621859	0.88[ASN][1000 genomes]
rs72621860	0.88[ASN][1000 genomes]
rs72621861	0.88[ASN][1000 genomes]
rs72621862	0.88[ASN][1000 genomes]
rs72621863	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72621865	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72621866	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72621867	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72621868	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72621869	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72621870	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72621871	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72621872	0.99[ASN][1000 genomes]
rs72621886	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72621891	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72621892	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72621893	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72621894	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72621895	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72621896	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72621897	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72621898	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72621899	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72621900	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72621901	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72621902	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72624503	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72624504	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72624505	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7435603	0.87[ASN][1000 genomes]
rs7439365	1.00[CEU][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9992141	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1029214	chr4:128292215-128683123	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537247	chr4:128292215-128683123	Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv817326	chr4:128292216-128915201	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1015564	chr4:128394657-128506962	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1017325	chr4:128408370-128509276	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv595387	chr4:128410916-128523964	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879916	chr4:128422400-128694288	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv879917	chr4:128478408-128841252	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv964280	chr4:128490982-128506981	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128496800-128497400	Enhancers	Ovary	ovary
2	chr4:128497200-128497600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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