Variant report
| Variant | rs17013627 |
|---|---|
| Chromosome Location | chr2:77256938-77256939 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10186167 | 1.00[EUR][1000 genomes] |
| rs11900195 | 1.00[MEX][hapmap] |
| rs1371433 | 1.00[EUR][1000 genomes] |
| rs1446715 | 1.00[EUR][1000 genomes] |
| rs17013488 | 1.00[EUR][1000 genomes] |
| rs17013539 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17013579 | 1.00[EUR][1000 genomes] |
| rs17013582 | 1.00[EUR][1000 genomes] |
| rs17013625 | 0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17013711 | 1.00[EUR][1000 genomes] |
| rs17013729 | 1.00[EUR][1000 genomes] |
| rs17013732 | 1.00[EUR][1000 genomes] |
| rs1900343 | 1.00[MEX][hapmap];1.00[EUR][1000 genomes] |
| rs57142792 | 1.00[EUR][1000 genomes] |
| rs57175018 | 1.00[EUR][1000 genomes] |
| rs57624759 | 1.00[EUR][1000 genomes] |
| rs58065105 | 1.00[EUR][1000 genomes] |
| rs58272699 | 0.89[AMR][1000 genomes] |
| rs58936600 | 1.00[EUR][1000 genomes] |
| rs60029001 | 1.00[EUR][1000 genomes] |
| rs61332902 | 1.00[EUR][1000 genomes] |
| rs72911856 | 1.00[EUR][1000 genomes] |
| rs72912512 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72912528 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72912539 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834266 | chr2:77120236-77287504 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv949670 | chr2:77125218-77712607 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv997284 | chr2:77233426-77303198 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
