Variant report

Variant	rs17014235
Chromosome Location	chr3:24198585-24198586
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24196174..24198881-chr3:24200287..24202945,2	MCF-7	breast:
2	chr3:24192615..24194555-chr3:24198415..24201096,2	K562	blood:
3	chr3:24192699..24194693-chr3:24196600..24199539,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55888013	0.83[AMR][1000 genomes]
rs73035969	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73035994	0.83[AMR][1000 genomes]
rs73037670	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24180000-24206600	Weak transcription	Pancreas	Pancrea
2	chr3:24186200-24230800	Weak transcription	Fetal Intestine Large	intestine
3	chr3:24188000-24202200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:24188200-24201600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:24188200-24203400	Weak transcription	Right Atrium	heart
6	chr3:24188200-24203600	Weak transcription	Liver	Liver
7	chr3:24188200-24210000	Weak transcription	Gastric	stomach
8	chr3:24188200-24215200	Weak transcription	Right Ventricle	heart
9	chr3:24189600-24198600	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:24190800-24202400	Weak transcription	Adipose Nuclei	Adipose
11	chr3:24192800-24202200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:24194000-24202200	Weak transcription	Fetal Lung	lung
13	chr3:24194000-24202200	Weak transcription	Ovary	ovary
14	chr3:24194000-24203000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:24195600-24202200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:24195800-24198800	Enhancers	HSMM	muscle
17	chr3:24195800-24199200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:24196200-24198800	Enhancers	NHEK	skin
19	chr3:24196200-24201800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:24196400-24198800	Enhancers	HSMMtube	muscle
21	chr3:24196600-24198600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:24197000-24199000	Enhancers	NHDF-Ad	bronchial
23	chr3:24197200-24198800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:24197200-24198800	Enhancers	Placenta	Placenta
25	chr3:24197200-24199000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:24197400-24198800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr3:24197400-24203000	Weak transcription	Aorta	Aorta
28	chr3:24197600-24198800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:24197600-24198800	Enhancers	HMEC	breast
30	chr3:24197600-24199200	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr3:24197800-24198600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr3:24197800-24198800	Enhancers	Psoas Muscle	Psoas
33	chr3:24197800-24198800	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr3:24197800-24198800	Enhancers	K562	blood
35	chr3:24197800-24199000	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr3:24198000-24198600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:24198000-24198600	Enhancers	NHLF	lung
38	chr3:24198000-24198800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:24198000-24199000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:24198000-24199000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:24198000-24199400	Strong transcription	Fetal Intestine Small	intestine
42	chr3:24198000-24202200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr3:24198200-24198600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:24198200-24198600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:24198200-24198600	Enhancers	NH-A	brain
46	chr3:24198200-24198600	Enhancers	Osteobl	bone
47	chr3:24198200-24198800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:24198200-24198800	Flanking Active TSS	A549	lung
49	chr3:24198400-24198600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:24198400-24198800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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