Variant report

Variant	rs55888013
Chromosome Location	chr3:24241633-24241634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12632086	0.87[EUR][1000 genomes]
rs17014235	0.83[AMR][1000 genomes]
rs73037623	0.90[EUR][1000 genomes]
rs73037662	1.00[EUR][1000 genomes]
rs73037670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73037676	1.00[ASN][1000 genomes]
rs73037679	1.00[ASN][1000 genomes]
rs73037680	1.00[ASN][1000 genomes]
rs9844955	0.91[EUR][1000 genomes]
rs9881663	0.95[EUR][1000 genomes]
rs9883105	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv3733	chr3:24216577-24261749	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24227800-24254200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24234600-24245600	Weak transcription	Fetal Intestine Small	intestine
3	chr3:24237600-24244400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:24238400-24254000	Weak transcription	Aorta	Aorta
5	chr3:24238600-24244600	Enhancers	NHDF-Ad	bronchial
6	chr3:24239000-24268200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:24239400-24245000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:24240000-24245000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:24240200-24242200	Enhancers	Hela-S3	cervix
10	chr3:24240600-24242000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:24240800-24242600	Weak transcription	Psoas Muscle	Psoas
12	chr3:24240800-24242800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:24241000-24242200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:24241000-24242200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:24241400-24242800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr3:24241400-24242800	Weak transcription	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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