Variant report

Variant	rs9881663
Chromosome Location	chr3:24227093-24227094
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24226799..24228075-chr3:24279198..24280289,8	MCF-7	breast:
2	chr3:24040049..24041089-chr3:24227019..24228043,3	MCF-7	breast:
3	chr3:24225359..24227468-chr3:24534115..24535866,2	K562	blood:

Variant related genes	Relation type
ENSG00000228791	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12632086	0.83[EUR][1000 genomes]
rs55888013	0.95[EUR][1000 genomes]
rs62255849	0.83[EUR][1000 genomes]
rs73037623	0.95[EUR][1000 genomes]
rs73037662	0.95[EUR][1000 genomes]
rs73037670	0.95[EUR][1000 genomes]
rs9844955	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883105	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv3733	chr3:24216577-24261749	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3384500	chr3:24224448-24227746	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24186200-24230800	Weak transcription	Fetal Intestine Large	intestine
2	chr3:24218600-24227400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:24219800-24227200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:24222400-24227200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:24223200-24227200	Weak transcription	Pancreas	Pancrea
6	chr3:24223200-24234400	Weak transcription	HepG2	liver
7	chr3:24223400-24227400	Weak transcription	Stomach Mucosa	stomach
8	chr3:24223400-24233400	Weak transcription	Liver	Liver
9	chr3:24223800-24227200	Weak transcription	Fetal Heart	heart
10	chr3:24224000-24227200	Weak transcription	Placenta	Placenta
11	chr3:24224800-24227200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:24224800-24227200	Weak transcription	Right Atrium	heart
13	chr3:24225000-24232800	Weak transcription	Fetal Lung	lung
14	chr3:24225800-24227600	Strong transcription	Fetal Intestine Small	intestine
15	chr3:24225800-24227800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr3:24225800-24228000	Enhancers	Psoas Muscle	Psoas
17	chr3:24225800-24228200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr3:24226000-24227200	Weak transcription	Right Ventricle	heart
19	chr3:24226000-24228800	Enhancers	NHDF-Ad	bronchial
20	chr3:24226200-24227200	Weak transcription	Brain Angular Gyrus	brain
21	chr3:24226200-24227200	Enhancers	K562	blood
22	chr3:24226200-24227800	Enhancers	Adipose Nuclei	Adipose
23	chr3:24226400-24230000	Weak transcription	Aorta	Aorta
24	chr3:24227000-24227600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:24227000-24227600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:24227000-24227600	Enhancers	Colon Smooth Muscle	Colon
27	chr3:24227000-24227800	Enhancers	Left Ventricle	heart
28	chr3:24227000-24228000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:24227000-24228000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr3:24227000-24228200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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