Variant report

Variant	rs73037670
Chromosome Location	chr3:24239676-24239677
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12632086	0.87[EUR][1000 genomes]
rs17014235	0.83[AMR][1000 genomes]
rs55888013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73037623	0.90[EUR][1000 genomes]
rs73037662	1.00[EUR][1000 genomes]
rs73037676	0.84[ASN][1000 genomes]
rs73037679	0.84[ASN][1000 genomes]
rs73037680	0.84[ASN][1000 genomes]
rs9844955	0.91[EUR][1000 genomes]
rs9881663	0.95[EUR][1000 genomes]
rs9883105	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv3733	chr3:24216577-24261749	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24227800-24254200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24234600-24245600	Weak transcription	Fetal Intestine Small	intestine
3	chr3:24235400-24240800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr3:24237400-24240000	Weak transcription	Psoas Muscle	Psoas
5	chr3:24237600-24244400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:24238400-24240200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:24238400-24241000	Weak transcription	HSMMtube	muscle
8	chr3:24238400-24254000	Weak transcription	Aorta	Aorta
9	chr3:24238600-24240200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:24238600-24244600	Enhancers	NHDF-Ad	bronchial
11	chr3:24238800-24240200	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:24238800-24240600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:24238800-24240600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:24238800-24241200	Weak transcription	NHLF	lung
15	chr3:24239000-24240200	Weak transcription	Hela-S3	cervix
16	chr3:24239000-24268200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr3:24239200-24239800	Enhancers	Pancreas	Pancrea
18	chr3:24239400-24239800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:24239400-24239800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr3:24239400-24240800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:24239400-24245000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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