Variant report

Variant	rs17014255
Chromosome Location	chr3:24203395-24203396
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24202694..24204614-chr3:24210475..24212572,2	MCF-7	breast:
2	chr3:24191569..24194138-chr3:24202031..24204441,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17014257	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2596623	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2596624	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2683544	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6797410	0.83[AFR][1000 genomes]
rs826216	0.82[AMR][1000 genomes]
rs9870693	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24180000-24206600	Weak transcription	Pancreas	Pancrea
2	chr3:24186200-24230800	Weak transcription	Fetal Intestine Large	intestine
3	chr3:24188200-24203400	Weak transcription	Right Atrium	heart
4	chr3:24188200-24203600	Weak transcription	Liver	Liver
5	chr3:24188200-24210000	Weak transcription	Gastric	stomach
6	chr3:24188200-24215200	Weak transcription	Right Ventricle	heart
7	chr3:24198800-24203400	Weak transcription	Psoas Muscle	Psoas
8	chr3:24198800-24203600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:24198800-24218800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:24199400-24225800	Weak transcription	Fetal Intestine Small	intestine
11	chr3:24199800-24203600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:24201600-24203600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:24201600-24204000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr3:24201800-24204200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr3:24202200-24203400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:24202200-24203400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr3:24202200-24203600	Enhancers	Fetal Lung	lung
18	chr3:24202200-24204000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr3:24202200-24204200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr3:24202200-24205000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr3:24202200-24208000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:24202400-24203400	Weak transcription	Lung	lung
23	chr3:24202400-24203400	Weak transcription	Ovary	ovary
24	chr3:24202400-24203600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:24202400-24203600	Weak transcription	Placenta	Placenta
26	chr3:24202400-24203800	Enhancers	Adipose Nuclei	Adipose
27	chr3:24202400-24204800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:24202400-24206200	Weak transcription	Left Ventricle	heart
29	chr3:24202400-24218000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr3:24202600-24203400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr3:24202600-24203400	Weak transcription	NHLF	lung
32	chr3:24202600-24206600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:24202800-24203400	Weak transcription	Spleen	Spleen
34	chr3:24203000-24203400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:24203000-24203600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr3:24203000-24203800	Enhancers	Aorta	Aorta
37	chr3:24203000-24203800	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr3:24203000-24203800	Enhancers	HUVEC	blood vessel
39	chr3:24203200-24203600	Enhancers	Cortex derived primary cultured neurospheres	brain

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