Variant report

Variant	rs2596624
Chromosome Location	chr3:24206204-24206205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17014255	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17014257	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2596623	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2683544	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs826216	0.81[TSI][hapmap];0.81[AMR][1000 genomes]
rs9310730	0.80[ASW][hapmap];0.91[YRI][hapmap]
rs9870693	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24180000-24206600	Weak transcription	Pancreas	Pancrea
2	chr3:24186200-24230800	Weak transcription	Fetal Intestine Large	intestine
3	chr3:24188200-24210000	Weak transcription	Gastric	stomach
4	chr3:24188200-24215200	Weak transcription	Right Ventricle	heart
5	chr3:24198800-24218800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:24199400-24225800	Weak transcription	Fetal Intestine Small	intestine
7	chr3:24202200-24208000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:24202400-24218000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:24202600-24206600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:24203600-24208000	Weak transcription	Ovary	ovary
11	chr3:24203600-24218600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:24203800-24206600	Weak transcription	Aorta	Aorta
13	chr3:24204000-24207800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:24204000-24208000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:24204000-24208000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:24204000-24208000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr3:24204000-24208000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:24204200-24207000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr3:24204200-24208000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr3:24204200-24213000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr3:24204800-24207600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr3:24204800-24208000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:24205000-24207600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr3:24205800-24206600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr3:24206200-24207000	Strong transcription	Left Ventricle	heart
26	chr3:24206200-24209600	Enhancers	Liver	Liver

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