Variant report

Variant	rs826216
Chromosome Location	chr3:24225870-24225871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24225359..24227468-chr3:24534115..24535866,2	K562	blood:
2	chr3:24220904..24222496-chr3:24224226..24226346,2	K562	blood:

Variant related genes	Relation type
ENSG00000228791	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1667737	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17014255	0.82[AMR][1000 genomes]
rs17014257	0.82[AMR][1000 genomes]
rs2596624	0.81[AMR][1000 genomes]
rs826215	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs865440	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv3733	chr3:24216577-24261749	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3384500	chr3:24224448-24227746	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24186200-24230800	Weak transcription	Fetal Intestine Large	intestine
2	chr3:24207000-24227000	Weak transcription	Left Ventricle	heart
3	chr3:24216600-24226200	Weak transcription	K562	blood
4	chr3:24218600-24227400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:24219200-24227000	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:24219400-24226000	Weak transcription	NHDF-Ad	bronchial
7	chr3:24219800-24227200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:24222400-24227200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:24223200-24227200	Weak transcription	Pancreas	Pancrea
10	chr3:24223200-24234400	Weak transcription	HepG2	liver
11	chr3:24223400-24227400	Weak transcription	Stomach Mucosa	stomach
12	chr3:24223400-24233400	Weak transcription	Liver	Liver
13	chr3:24223800-24227200	Weak transcription	Fetal Heart	heart
14	chr3:24224000-24227200	Weak transcription	Placenta	Placenta
15	chr3:24224400-24227000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:24224800-24227200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:24224800-24227200	Weak transcription	Right Atrium	heart
18	chr3:24225000-24232800	Weak transcription	Fetal Lung	lung
19	chr3:24225800-24226000	Enhancers	Right Ventricle	heart
20	chr3:24225800-24226400	Enhancers	Aorta	Aorta
21	chr3:24225800-24227600	Strong transcription	Fetal Intestine Small	intestine
22	chr3:24225800-24227800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr3:24225800-24228000	Enhancers	Psoas Muscle	Psoas
24	chr3:24225800-24228200	Enhancers	Skeletal Muscle Female	skeletal muscle

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