The 2.0 version of rSNPBase

Variant report

Variant rs17015183
Chromosome Location chr1:209948711-209948712
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:209942800-209956800 Weak transcription Small Intestine intestine
2 chr1:209942800-209957200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr1:209943200-209950600 Weak transcription Psoas Muscle Psoas
4 chr1:209943400-209952600 Weak transcription Fetal Intestine Small intestine
5 chr1:209943600-209951000 Weak transcription HSMMtube muscle
6 chr1:209943600-209956600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr1:209943800-209950800 Weak transcription Fetal Muscle Leg muscle
8 chr1:209943800-209954600 Weak transcription NHEK skin
9 chr1:209943800-209956600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr1:209943800-209956600 Weak transcription Brain Hippocampus Middle brain
11 chr1:209943800-209957000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr1:209943800-209957200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr1:209944000-209952800 Weak transcription HMEC breast
14 chr1:209944000-209956000 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr1:209944000-209956600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr1:209944400-209948800 Genic enhancers Monocytes-CD14+_RO01746 blood
17 chr1:209944600-209954400 Weak transcription Fetal Muscle Trunk muscle
18 chr1:209944800-209950000 Genic enhancers Primary B cells from peripheral blood blood
19 chr1:209944800-209951200 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr1:209944800-209955200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr1:209944800-209956600 Weak transcription Brain Inferior Temporal Lobe brain
22 chr1:209944800-209956600 Weak transcription Right Ventricle heart
23 chr1:209945000-209950200 Weak transcription Fetal Intestine Large intestine
24 chr1:209945000-209953400 Weak transcription Liver Liver
25 chr1:209945000-209953600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr1:209945000-209953800 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr1:209945000-209956000 Weak transcription Brain Anterior Caudate brain
28 chr1:209945000-209956400 Weak transcription Left Ventricle heart
29 chr1:209945000-209956600 Weak transcription Adipose Nuclei Adipose
30 chr1:209945000-209956600 Weak transcription Brain Angular Gyrus brain
31 chr1:209945000-209956600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr1:209945000-209956600 Weak transcription Esophagus oesophagus
33 chr1:209945000-209956600 Weak transcription Rectal Smooth Muscle rectum
34 chr1:209945000-209956800 Weak transcription HUES6 Cell Line embryonic stem cell
35 chr1:209945000-209956800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
36 chr1:209945200-209949000 Genic enhancers Primary T helper 17 cells PMA-I stimulated --
37 chr1:209945200-209954600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr1:209945200-209956600 Weak transcription Colonic Mucosa Colon
39 chr1:209945200-209956600 Weak transcription Pancreas Pancrea
40 chr1:209945200-209957200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr1:209945400-209954600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr1:209945400-209956400 Weak transcription Lung lung
43 chr1:209945600-209948800 Weak transcription Rectal Mucosa Donor 29 rectum
44 chr1:209945600-209955800 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr1:209945600-209956400 Weak transcription Gastric stomach
46 chr1:209945600-209956600 Weak transcription Fetal Lung lung
47 chr1:209945800-209956600 Strong transcription Primary neutrophils fromperipheralblood blood
48 chr1:209946000-209948800 Weak transcription Spleen Spleen
49 chr1:209946000-209949200 Genic enhancers Primary T cells fromperipheralblood blood
50 chr1:209946000-209949600 Genic enhancers Primary T killer memory cells from peripheral blood blood

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Last update: Aug 31, 2015