Variant report

Variant	rs11803382
Chromosome Location	chr1:209986426-209986427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:209984299..209986962-chr1:209994291..209996939,2	MCF-7	breast:
2	chr1:209980787..209983095-chr1:209985152..209988028,2	K562	blood:
3	chr1:209984333..209986966-chr1:209996753..209999573,2	MCF-7	breast:
4	chr1:209986093..209989854-chr1:209998017..210002656,5	K562	blood:

Variant related genes	Relation type
ENSG00000117597	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1005287	0.81[AFR][1000 genomes]
rs1044516	0.86[EUR][1000 genomes]
rs1073150	0.86[ASN][1000 genomes]
rs11805830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12070337	0.96[AFR][1000 genomes]
rs12403599	0.95[YRI][hapmap]
rs1319072	0.90[JPT][hapmap]
rs1415543	0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs17015183	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17015218	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17015224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17015226	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17015259	0.87[EUR][1000 genomes]
rs17015309	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs17015330	0.93[ASN][1000 genomes]
rs17015361	0.85[CEU][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs17015379	0.82[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs17317411	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17389436	0.81[AMR][1000 genomes]
rs2013162	0.94[YRI][hapmap]
rs2073485	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2073486	0.94[YRI][hapmap]
rs2073487	0.95[YRI][hapmap]
rs2235372	0.87[EUR][1000 genomes]
rs2235373	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2235375	0.94[YRI][hapmap]
rs2236908	0.94[YRI][hapmap]
rs2236909	0.94[YRI][hapmap]
rs2357229	0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs2357230	0.90[ASN][1000 genomes]
rs35508116	0.81[ASN][1000 genomes]
rs3753518	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41305104	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4556361	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs4844895	0.87[EUR][1000 genomes]
rs58637469	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59100111	0.90[ASN][1000 genomes]
rs61747285	0.93[ASN][1000 genomes]
rs6540559	0.87[EUR][1000 genomes]
rs6540560	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540561	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540563	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs6540564	0.90[ASN][1000 genomes]
rs6659549	0.81[AFR][1000 genomes]
rs6685182	0.94[YRI][hapmap]
rs6694552	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6696825	0.87[EUR][1000 genomes]
rs6698154	0.93[ASN][1000 genomes]
rs73093853	0.86[ASN][1000 genomes]
rs742214	0.87[EUR][1000 genomes]
rs742215	0.87[EUR][1000 genomes]
rs7511996	0.86[ASN][1000 genomes]
rs7522045	0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs7522250	0.87[EUR][1000 genomes]
rs7525951	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7539638	0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs7545538	0.80[AFR][1000 genomes]
rs7545542	0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs7550857	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7552506	0.94[YRI][hapmap]
rs764093	0.87[EUR][1000 genomes]
rs926346	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs926347	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11803382	TRAF3IP3	cis	Whole Blood	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209979800-209989200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:209981800-209989200	Weak transcription	Esophagus	oesophagus
3	chr1:209981800-209989600	Weak transcription	Spleen	Spleen
4	chr1:209981800-209989800	Weak transcription	Right Atrium	heart
5	chr1:209982000-209989200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:209982400-209989200	Weak transcription	Placenta	Placenta
7	chr1:209984200-209988000	Weak transcription	Fetal Thymus	thymus
8	chr1:209984400-209987800	Weak transcription	NHEK	skin
9	chr1:209984400-209988000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:209984400-209989200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:209984600-209987800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:209984600-209988200	Weak transcription	K562	blood
13	chr1:209985400-209989200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:209985600-209987800	Weak transcription	HMEC	breast
15	chr1:209985800-209987800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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