Variant report

Variant rs2357229
Chromosome Location chr1:209980489-209980490
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:209979600-209980800 Weak transcription HSMMtube muscle
2 chr1:209979600-209985000 Weak transcription Gastric stomach
3 chr1:209979800-209980600 Enhancers Placenta Placenta
4 chr1:209979800-209980800 Weak transcription Right Ventricle heart
5 chr1:209979800-209981400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr1:209979800-209981400 Weak transcription Spleen Spleen
7 chr1:209979800-209989200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr1:209980000-209980600 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr1:209980000-209980800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr1:209980000-209980800 Weak transcription Pancreas Pancrea
11 chr1:209980000-209980800 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr1:209980000-209981000 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr1:209980000-209981000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr1:209980000-209981000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr1:209980000-209981000 Weak transcription Muscle Satellite Cultured Cells --
16 chr1:209980000-209981000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
17 chr1:209980000-209981000 Enhancers Fetal Heart heart
18 chr1:209980000-209981000 Weak transcription NHDF-Ad bronchial
19 chr1:209980000-209981400 Weak transcription Esophagus oesophagus
20 chr1:209980000-209981400 Weak transcription Fetal Muscle Trunk muscle
21 chr1:209980000-209981600 Weak transcription iPS-20b Cell Line embryonic stem cell
22 chr1:209980000-209981600 Weak transcription Adipose Nuclei Adipose
23 chr1:209980000-209981600 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr1:209980000-209981600 Weak transcription Right Atrium heart
25 chr1:209980000-209982000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
26 chr1:209980000-209982000 Enhancers Fetal Adrenal Gland Adrenal Gland
27 chr1:209980000-209982200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr1:209980000-209982200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr1:209980000-209982200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
30 chr1:209980000-209982200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
31 chr1:209980000-209982200 Enhancers Stomach Mucosa stomach
32 chr1:209980000-209982400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr1:209980000-209982600 Enhancers Breast Myoepithelial Primary Cells Breast
34 chr1:209980000-209983600 Enhancers Fetal Intestine Large intestine
35 chr1:209980000-209983600 Enhancers Fetal Intestine Small intestine
36 chr1:209980200-209980600 Weak transcription NH-A brain
37 chr1:209980200-209980600 Weak transcription NHLF lung
38 chr1:209980200-209980600 Weak transcription Osteobl bone
39 chr1:209980200-209980800 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr1:209980200-209981200 Enhancers Small Intestine intestine
41 chr1:209980200-209981800 Enhancers Duodenum Mucosa Duodenum
42 chr1:209980200-209982200 Enhancers HUVEC blood vessel
43 chr1:209980200-209982400 Enhancers K562 blood
44 chr1:209980400-209980800 Flanking Active TSS HMEC breast
45 chr1:209980400-209981000 Flanking Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr1:209980400-209981200 Flanking Active TSS NHEK skin
47 chr1:209980400-209981400 Weak transcription Stomach Smooth Muscle stomach
48 chr1:209980400-209981600 Weak transcription Placenta Amnion Placenta Amnion
49 chr1:209980400-209981600 Weak transcription Rectal Mucosa Donor 31 rectum

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