Variant report

Variant	rs17016179
Chromosome Location	chr4:143393725-143393726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143254956..143256541-chr4:143392223..143394166,2	MCF-7	breast:
2	chr4:143345499..143347923-chr4:143391680..143394549,2	MCF-7	breast:
3	chr4:143392966..143400087-chr4:143764739..143770446,12	MCF-7	breast:
4	chr4:143389462..143399452-chr4:143428707..143442488,28	MCF-7	breast:
5	chr4:143351692..143359150-chr4:143392769..143399702,12	MCF-7	breast:
6	chr4:143392466..143394692-chr4:143481340..143483349,2	MCF-7	breast:
7	chr4:143391120..143394953-chr4:143764140..143771077,8	MCF-7	breast:
8	chr20:45986729..45989640-chr4:143391962..143394020,2	MCF-7	breast:
9	chr4:143391421..143397876-chr4:143484529..143495051,12	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17016229	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17016298	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57682957	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58197142	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850893	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850896	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850897	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143369200-143410600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:143371600-143400800	Weak transcription	Aorta	Aorta
3	chr4:143380400-143394800	Weak transcription	Pancreas	Pancrea
4	chr4:143384600-143394800	Weak transcription	Fetal Intestine Small	intestine
5	chr4:143385200-143394800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:143388600-143395200	Weak transcription	HSMMtube	muscle
7	chr4:143390400-143397000	Weak transcription	Right Atrium	heart
8	chr4:143393000-143394400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:143393000-143394400	Weak transcription	Esophagus	oesophagus
10	chr4:143393400-143395000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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