Variant report

Variant	rs73850896
Chromosome Location	chr4:143428011-143428012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143391887..143396825-chr4:143425228..143429441,6	MCF-7	breast:
2	chr4:143427176..143429713-chr4:143432403..143434347,2	K562	blood:
3	chr4:143427468..143430250-chr4:143437553..143439341,2	MCF-7	breast:
4	chr4:143427848..143430198-chr4:143433217..143434733,2	MCF-7	breast:
5	chr4:143427118..143429201-chr4:143430844..143432946,2	MCF-7	breast:
6	chr4:143388381..143398737-chr4:143415738..143428678,26	MCF-7	breast:
7	chr4:143426831..143429713-chr4:143432293..143434347,2	K562	blood:
8	chr4:143420911..143422875-chr4:143427108..143429305,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17016179	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17016229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17016298	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57682957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58197142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850893	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143425600-143429600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:143427400-143428400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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