Variant report

Variant	rs57682957
Chromosome Location	chr4:143408663-143408664
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17016179	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17016229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17016298	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58197142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850893	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143369200-143410600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:143397400-143414800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:143401800-143418600	Weak transcription	Fetal Heart	heart
4	chr4:143407400-143409600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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