Variant report

Variant	rs17016213
Chromosome Location	chr3:25378343-25378344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10510565	0.88[EUR][1000 genomes]
rs11925814	0.80[EUR][1000 genomes]
rs1483835	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1483839	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1564744	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17016164	0.85[AMR][1000 genomes]
rs17016182	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17016185	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17016192	0.93[AMR][1000 genomes]
rs17016253	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17016257	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2086790	0.80[EUR][1000 genomes]
rs57064248	0.80[EUR][1000 genomes]
rs60917922	0.80[EUR][1000 genomes]
rs6769438	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156056	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25377200-25384000	Weak transcription	Fetal Lung	lung
2	chr3:25377400-25379800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:25378200-25378400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:25378200-25378600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:25378200-25380800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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