Variant report

Variant	rs17017716
Chromosome Location	chr1:211710687-211710688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11119794	1.00[CHB][hapmap]
rs11578614	1.00[CHB][hapmap]
rs12074002	1.00[CHB][hapmap]
rs12561861	1.00[CHB][hapmap]
rs1415249	1.00[YRI][hapmap]
rs17638852	1.00[ASN][1000 genomes]
rs2184844	1.00[CHB][hapmap]
rs2794731	1.00[CHB][hapmap]
rs6659316	1.00[CHB][hapmap]
rs6661565	1.00[CHB][hapmap]
rs6679498	0.86[YRI][hapmap]
rs701926	1.00[CHB][hapmap]
rs73073121	1.00[ASN][1000 genomes]
rs7511687	1.00[CHB][hapmap]
rs7516189	1.00[CHB][hapmap]
rs7526891	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7527002	1.00[CHB][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7539988	1.00[CHB][hapmap]
rs7554588	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211689400-211715000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:211701600-211711000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:211701800-211712400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:211702600-211711600	Weak transcription	Spleen	Spleen
5	chr1:211703400-211711600	Weak transcription	Esophagus	oesophagus
6	chr1:211705200-211714600	Weak transcription	Right Atrium	heart
7	chr1:211705600-211711600	Weak transcription	Fetal Heart	heart
8	chr1:211705600-211714800	Weak transcription	Brain Anterior Caudate	brain
9	chr1:211705600-211714800	Weak transcription	Right Ventricle	heart
10	chr1:211708200-211714600	Weak transcription	Pancreas	Pancrea
11	chr1:211709000-211711000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:211710000-211712600	Enhancers	Stomach Mucosa	stomach
13	chr1:211710200-211714600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:211710400-211711600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:211710600-211710800	Bivalent Enhancer	HepG2	liver
16	chr1:211710600-211710800	Flanking Active TSS	Osteobl	bone
17	chr1:211710600-211711200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:211710600-211711200	Enhancers	K562	blood
19	chr1:211710600-211713000	Enhancers	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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