Variant report

Variant	rs17018889
Chromosome Location	chr3:81443206-81443207
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13096967	0.83[ASN][1000 genomes]
rs17018891	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs276106	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35724468	0.81[ASN][1000 genomes]
rs35959610	0.81[ASN][1000 genomes]
rs62265363	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62265369	0.83[ASN][1000 genomes]
rs9837999	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81436200-81446600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:81441400-81445800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:81442000-81445200	Enhancers	Brain Germinal Matrix	brain
4	chr3:81442600-81443600	Enhancers	Brain Substantia Nigra	brain
5	chr3:81442600-81444000	Enhancers	Brain Anterior Caudate	brain
6	chr3:81442600-81444400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:81442600-81445000	Enhancers	Fetal Brain Female	brain
8	chr3:81442600-81445200	Enhancers	Fetal Brain Male	brain
9	chr3:81443000-81444000	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:81443200-81444000	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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