Variant report

Variant	rs17020072
Chromosome Location	chr2:37155315-37155316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs1008838	0.86[CHB][hapmap]
rs10166161	0.87[ASN][1000 genomes]
rs10182741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10185737	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10189328	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs10189918	0.90[ASN][1000 genomes]
rs10201963	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10202311	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10209808	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10490659	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10495868	1.00[CHB][hapmap]
rs10865120	0.86[CHB][hapmap]
rs11124552	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs11674211	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11675109	1.00[CHB][hapmap]
rs11676225	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs11678303	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs11682966	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11685600	0.87[ASN][1000 genomes]
rs11686605	0.85[ASN][1000 genomes]
rs11691236	0.89[ASN][1000 genomes]
rs11887829	0.84[ASN][1000 genomes]
rs11904023	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12328274	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12479195	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs12616770	0.89[ASN][1000 genomes]
rs12624290	1.00[CHB][hapmap];0.86[YRI][hapmap];0.83[ASN][1000 genomes]
rs13385627	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13385823	0.84[ASN][1000 genomes]
rs13388406	0.87[ASN][1000 genomes]
rs13401327	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13408941	0.94[ASN][1000 genomes]
rs13413438	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13424317	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17020005	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs17020024	0.85[ASN][1000 genomes]
rs17020069	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17020074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17020084	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17442690	0.81[ASN][1000 genomes]
rs17442739	0.81[ASN][1000 genomes]
rs1861433	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1861436	1.00[CHB][hapmap]
rs2160379	0.85[ASN][1000 genomes]
rs2216106	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2287087	0.81[ASN][1000 genomes]
rs2302658	0.92[ASN][1000 genomes]
rs2540918	0.83[ASN][1000 genomes]
rs2540919	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs2540920	0.83[ASN][1000 genomes]
rs2540925	0.87[ASN][1000 genomes]
rs2540931	0.87[ASN][1000 genomes]
rs2540936	0.87[ASN][1000 genomes]
rs2541000	0.86[CHB][hapmap]
rs2691104	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2691109	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2691110	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2691114	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2691115	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs2691116	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs2691118	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2691122	0.82[ASN][1000 genomes]
rs2717492	0.83[ASN][1000 genomes]
rs2717494	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs2717495	0.83[ASN][1000 genomes]
rs2717501	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2717505	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2717509	1.00[CHB][hapmap]
rs2717510	1.00[CHB][hapmap]
rs2717511	1.00[CHB][hapmap]
rs2717512	1.00[CHB][hapmap]
rs2717518	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2717519	0.81[ASN][1000 genomes]
rs2717522	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs28718824	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs28754306	0.94[ASN][1000 genomes]
rs35622893	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3770775	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs3845779	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs41486347	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4635515	1.00[CHB][hapmap]
rs4670651	0.86[CHB][hapmap]
rs55993128	0.89[ASN][1000 genomes]
rs56186144	0.89[ASN][1000 genomes]
rs57671539	0.89[ASN][1000 genomes]
rs57884362	0.83[ASN][1000 genomes]
rs58970461	0.89[ASN][1000 genomes]
rs59854977	0.87[ASN][1000 genomes]
rs6715033	0.87[ASN][1000 genomes]
rs6739553	0.85[ASN][1000 genomes]
rs6756876	0.87[ASN][1000 genomes]
rs723673	1.00[CHB][hapmap]
rs73924932	0.94[ASN][1000 genomes]
rs73924949	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73924952	0.87[ASN][1000 genomes]
rs7562109	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[ASN][1000 genomes]
rs7579735	0.96[ASN][1000 genomes]
rs7581702	1.00[CHB][hapmap]
rs7583071	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs998321	1.00[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv456363	chr2:37109281-37235324	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	nsv581470	chr2:37109281-37235324	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv962523	chr2:37143222-37171714	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv828931	chr2:37146993-37156554	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv963787	chr2:37150704-37158383	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37105000-37164600	Weak transcription	Lung	lung
2	chr2:37105200-37157800	Weak transcription	Pancreas	Pancrea
3	chr2:37105200-37164600	Weak transcription	Spleen	Spleen
4	chr2:37120600-37168000	Weak transcription	Thymus	Thymus
5	chr2:37120800-37166400	Weak transcription	Placenta	Placenta
6	chr2:37127800-37157200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:37132400-37192400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr2:37134600-37192400	Weak transcription	Fetal Stomach	stomach
9	chr2:37136400-37178800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:37138600-37160600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:37140600-37157800	Weak transcription	Left Ventricle	heart
12	chr2:37140800-37158000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:37140800-37158200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:37141400-37158200	Weak transcription	Fetal Muscle Leg	muscle
15	chr2:37142000-37178400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr2:37142000-37178800	Weak transcription	Primary B cells from cord blood	blood
17	chr2:37143400-37191000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr2:37143600-37156400	Weak transcription	Dnd41	blood
19	chr2:37143800-37191800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr2:37144000-37157800	Weak transcription	K562	blood
21	chr2:37150200-37191800	Weak transcription	Fetal Thymus	thymus
22	chr2:37152200-37164200	Weak transcription	Fetal Intestine Small	intestine
23	chr2:37152400-37156800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr2:37152400-37177800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:37152400-37191800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr2:37152600-37158200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr2:37153800-37158000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr2:37153800-37158200	Weak transcription	Fetal Lung	lung
29	chr2:37153800-37158200	Weak transcription	NH-A	brain
30	chr2:37153800-37160800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr2:37153800-37166800	Weak transcription	Brain Substantia Nigra	brain
32	chr2:37154000-37158200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr2:37154000-37158200	Weak transcription	NHDF-Ad	bronchial
34	chr2:37154000-37178400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr2:37154200-37157200	Weak transcription	Fetal Heart	heart
36	chr2:37154200-37157800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr2:37154200-37158000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr2:37154200-37158000	Weak transcription	NHLF	lung
39	chr2:37154200-37158200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr2:37154200-37177600	Weak transcription	Primary T cells from cord blood	blood
41	chr2:37154200-37179400	Weak transcription	Brain Anterior Caudate	brain
42	chr2:37154400-37157200	Weak transcription	HMEC	breast
43	chr2:37154400-37157600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr2:37154400-37157600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr2:37154400-37157800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr2:37154400-37157800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr2:37154400-37157800	Weak transcription	A549	lung
48	chr2:37154400-37158000	Weak transcription	HSMM	muscle
49	chr2:37154400-37158400	Weak transcription	Hela-S3	cervix
50	chr2:37154600-37157200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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