Variant report

Variant	rs17021820
Chromosome Location	chr4:95493234-95493235
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95484063..95485618-chr4:95491587..95493317,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10031667	1.00[JPT][hapmap]
rs10516949	1.00[EUR][1000 genomes]
rs11934623	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11943494	1.00[EUR][1000 genomes]
rs17021743	1.00[EUR][1000 genomes]
rs17021819	1.00[EUR][1000 genomes]
rs17021884	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17021894	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17021906	1.00[EUR][1000 genomes]
rs17022098	1.00[JPT][hapmap]
rs4392514	1.00[EUR][1000 genomes]
rs4699300	1.00[JPT][hapmap]
rs56955132	1.00[EUR][1000 genomes]
rs57569167	1.00[EUR][1000 genomes]
rs57981938	1.00[EUR][1000 genomes]
rs60223269	1.00[EUR][1000 genomes]
rs61477568	1.00[EUR][1000 genomes]
rs61628216	1.00[EUR][1000 genomes]
rs6825392	1.00[EUR][1000 genomes]
rs6825799	1.00[EUR][1000 genomes]
rs6826138	1.00[EUR][1000 genomes]
rs6849063	1.00[EUR][1000 genomes]
rs6851080	1.00[EUR][1000 genomes]
rs72878415	1.00[EUR][1000 genomes]
rs72878481	1.00[EUR][1000 genomes]
rs72878484	1.00[EUR][1000 genomes]
rs72878489	1.00[EUR][1000 genomes]
rs72878495	1.00[EUR][1000 genomes]
rs72878497	1.00[EUR][1000 genomes]
rs72878499	1.00[EUR][1000 genomes]
rs72880403	1.00[EUR][1000 genomes]
rs72880404	1.00[EUR][1000 genomes]
rs72880405	1.00[EUR][1000 genomes]
rs72880406	1.00[EUR][1000 genomes]
rs72880407	1.00[EUR][1000 genomes]
rs72890410	1.00[EUR][1000 genomes]
rs7684833	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95479800-95496800	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:95481200-95494600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:95481400-95496800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:95481400-95496800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:95483400-95496600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:95483400-95496800	Weak transcription	NHEK	skin
7	chr4:95483400-95524400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:95483600-95496200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:95483800-95496600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:95483800-95496800	Weak transcription	Gastric	stomach
11	chr4:95483800-95497000	Weak transcription	HMEC	breast
12	chr4:95484000-95495600	Weak transcription	NH-A	brain
13	chr4:95484000-95496600	Weak transcription	HSMMtube	muscle
14	chr4:95484000-95507400	Weak transcription	Hela-S3	cervix
15	chr4:95484600-95496800	Weak transcription	HSMM	muscle
16	chr4:95485600-95496600	Weak transcription	Ovary	ovary
17	chr4:95485800-95495200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:95485800-95496800	Weak transcription	Psoas Muscle	Psoas
19	chr4:95485800-95496800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr4:95486000-95496800	Weak transcription	Aorta	Aorta
21	chr4:95486200-95495000	Weak transcription	Placenta	Placenta
22	chr4:95486200-95495200	Weak transcription	Left Ventricle	heart
23	chr4:95486800-95496600	Weak transcription	Right Ventricle	heart
24	chr4:95487000-95495200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:95487000-95496600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr4:95489000-95496800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr4:95489000-95507400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr4:95489200-95496800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr4:95489200-95506800	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr4:95489200-95507400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr4:95489200-95509800	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr4:95489400-95496600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr4:95489400-95496600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr4:95489400-95496800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:95489400-95496800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr4:95489400-95496800	Weak transcription	Adipose Nuclei	Adipose
37	chr4:95489400-95496800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr4:95489400-95496800	Weak transcription	Right Atrium	heart
39	chr4:95489400-95496800	Weak transcription	K562	blood
40	chr4:95489400-95506200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr4:95489600-95496800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:95489600-95508200	Weak transcription	GM12878-XiMat	blood
43	chr4:95489600-95522800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr4:95489600-95539200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr4:95490400-95496600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr4:95490600-95496800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr4:95491400-95494000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:95491400-95494200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr4:95491400-95494400	Enhancers	Liver	Liver
50	chr4:95491400-95496800	Weak transcription	Esophagus	oesophagus

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