Variant report

Variant	rs7684833
Chromosome Location	chr4:95483881-95483882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95479917..95481634-chr4:95483291..95486276,2	K562	blood:
2	chr4:95377214..95379543-chr4:95483011..95484694,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10516949	1.00[EUR][1000 genomes]
rs11934623	1.00[EUR][1000 genomes]
rs11943494	1.00[EUR][1000 genomes]
rs17021743	1.00[EUR][1000 genomes]
rs17021819	1.00[EUR][1000 genomes]
rs17021820	1.00[EUR][1000 genomes]
rs17021884	1.00[EUR][1000 genomes]
rs17021906	1.00[EUR][1000 genomes]
rs4392514	1.00[EUR][1000 genomes]
rs56955132	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57569167	1.00[EUR][1000 genomes]
rs57981938	1.00[EUR][1000 genomes]
rs60223269	1.00[EUR][1000 genomes]
rs61477568	1.00[EUR][1000 genomes]
rs61628216	1.00[EUR][1000 genomes]
rs6825392	1.00[EUR][1000 genomes]
rs6825799	1.00[EUR][1000 genomes]
rs6826138	1.00[EUR][1000 genomes]
rs6849063	1.00[EUR][1000 genomes]
rs6851080	1.00[EUR][1000 genomes]
rs72878415	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72878481	1.00[EUR][1000 genomes]
rs72878484	1.00[EUR][1000 genomes]
rs72878489	1.00[EUR][1000 genomes]
rs72878495	1.00[EUR][1000 genomes]
rs72878497	1.00[EUR][1000 genomes]
rs72878499	1.00[EUR][1000 genomes]
rs72880403	1.00[EUR][1000 genomes]
rs72880404	1.00[EUR][1000 genomes]
rs72880405	1.00[EUR][1000 genomes]
rs72880406	1.00[EUR][1000 genomes]
rs72880407	1.00[EUR][1000 genomes]
rs72890410	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95457400-95485400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:95458200-95488800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:95463000-95487800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:95470000-95489200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:95470400-95484800	Weak transcription	Fetal Intestine Large	intestine
6	chr4:95470600-95489200	Weak transcription	Small Intestine	intestine
7	chr4:95479200-95484000	Enhancers	Fetal Heart	heart
8	chr4:95479400-95484000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:95479400-95484000	Enhancers	NH-A	brain
10	chr4:95479400-95484600	Enhancers	Osteobl	bone
11	chr4:95479800-95491400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:95479800-95496800	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:95480200-95484000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr4:95480600-95488000	Enhancers	Liver	Liver
15	chr4:95481000-95484400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:95481200-95494600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:95481400-95484000	Enhancers	HSMMtube	muscle
18	chr4:95481400-95485200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr4:95481400-95496800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:95481400-95496800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr4:95481600-95484000	Enhancers	Hela-S3	cervix
22	chr4:95481800-95484600	Enhancers	HSMM	muscle
23	chr4:95482000-95485200	Weak transcription	Aorta	Aorta
24	chr4:95482000-95485400	Weak transcription	Placenta	Placenta
25	chr4:95482200-95485200	Weak transcription	Left Ventricle	heart
26	chr4:95482200-95485400	Weak transcription	Psoas Muscle	Psoas
27	chr4:95482600-95484000	Enhancers	Colon Smooth Muscle	Colon
28	chr4:95482600-95484000	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr4:95482600-95484200	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr4:95482600-95485400	Enhancers	HepG2	liver
31	chr4:95483000-95484000	Enhancers	Adipose Nuclei	Adipose
32	chr4:95483000-95484000	Enhancers	Ovary	ovary
33	chr4:95483000-95484800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:95483000-95485800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:95483000-95486400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr4:95483200-95484000	Enhancers	Stomach Mucosa	stomach
37	chr4:95483200-95486200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:95483200-95488400	Enhancers	HUVEC	blood vessel
39	chr4:95483200-95488800	Weak transcription	K562	blood
40	chr4:95483400-95485200	Weak transcription	Right Atrium	heart
41	chr4:95483400-95491600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr4:95483400-95491800	Weak transcription	Brain Anterior Caudate	brain
43	chr4:95483400-95496600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:95483400-95496800	Weak transcription	NHEK	skin
45	chr4:95483400-95524400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr4:95483600-95484000	Enhancers	Fetal Intestine Small	intestine
47	chr4:95483600-95496200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:95483800-95485400	Weak transcription	A549	lung
49	chr4:95483800-95486000	Weak transcription	Right Ventricle	heart
50	chr4:95483800-95488800	Weak transcription	Duodenum Mucosa	Duodenum

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