Variant report

Variant	rs72878484
Chromosome Location	chr4:95532713-95532714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95531315..95533011-chr4:96007833..96010068,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10516949	1.00[EUR][1000 genomes]
rs11934623	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11943494	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021743	1.00[EUR][1000 genomes]
rs17021819	1.00[EUR][1000 genomes]
rs17021820	1.00[EUR][1000 genomes]
rs17021884	1.00[EUR][1000 genomes]
rs17021906	1.00[EUR][1000 genomes]
rs4392514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56955132	1.00[EUR][1000 genomes]
rs57569167	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57981938	1.00[EUR][1000 genomes]
rs60223269	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61477568	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61628216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6825392	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6825799	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6826138	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6849063	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6851080	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72878415	1.00[EUR][1000 genomes]
rs72878481	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72878489	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72878495	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72878497	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72878499	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72880403	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72880404	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72880405	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72880406	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72880407	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890410	1.00[EUR][1000 genomes]
rs7684833	1.00[EUR][1000 genomes]
rs9992701	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95489600-95539200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:95493200-95540200	Weak transcription	Small Intestine	intestine
3	chr4:95493200-95584800	Weak transcription	Primary B cells from cord blood	blood
4	chr4:95497200-95553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:95497200-95569400	Weak transcription	Esophagus	oesophagus
6	chr4:95497400-95542000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:95497600-95539200	Weak transcription	HepG2	liver
8	chr4:95507200-95548200	Weak transcription	Psoas Muscle	Psoas
9	chr4:95507200-95548600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:95507800-95539200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:95511200-95554800	Weak transcription	NHDF-Ad	bronchial
12	chr4:95513000-95539000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:95514200-95539200	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:95514400-95539200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:95514400-95544600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:95514600-95539200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:95514600-95542600	Weak transcription	NHEK	skin
18	chr4:95514800-95539000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr4:95515000-95538600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr4:95515000-95562000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:95521600-95544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:95522200-95538200	Weak transcription	Placenta	Placenta
23	chr4:95525000-95533600	Weak transcription	Gastric	stomach
24	chr4:95525000-95538600	Weak transcription	Fetal Intestine Small	intestine
25	chr4:95525000-95538600	Weak transcription	Right Ventricle	heart
26	chr4:95525000-95539200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:95525000-95539200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr4:95525000-95569600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:95525000-95586400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr4:95525000-95590000	Weak transcription	Lung	lung
31	chr4:95525400-95539200	Weak transcription	HSMMtube	muscle
32	chr4:95525400-95562200	Weak transcription	NHLF	lung
33	chr4:95526600-95539000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:95526600-95539200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr4:95526600-95539200	Weak transcription	Ovary	ovary
36	chr4:95526600-95544800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:95526800-95533600	Weak transcription	Colon Smooth Muscle	Colon
38	chr4:95526800-95534200	Weak transcription	Brain Substantia Nigra	brain
39	chr4:95526800-95539000	Weak transcription	Adipose Nuclei	Adipose
40	chr4:95526800-95539200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr4:95526800-95551000	Weak transcription	Brain Anterior Caudate	brain
42	chr4:95527800-95592200	Weak transcription	Pancreas	Pancrea
43	chr4:95528000-95555000	Weak transcription	Aorta	Aorta
44	chr4:95528400-95533800	Strong transcription	HUVEC	blood vessel
45	chr4:95528800-95532800	Strong transcription	HSMM	muscle
46	chr4:95528800-95532800	Strong transcription	Osteobl	bone
47	chr4:95529400-95534000	Strong transcription	NH-A	brain
48	chr4:95531600-95532800	Strong transcription	Fetal Heart	heart
49	chr4:95531600-95539200	Weak transcription	Duodenum Mucosa	Duodenum
50	chr4:95531800-95532800	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links