Variant report

Variant	rs17023381
Chromosome Location	chr3:85876451-85876452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10511071	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10511072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13320771	0.85[CHB][hapmap]
rs13353526	0.88[JPT][hapmap]
rs17023290	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs2875528	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs7616936	0.80[CEU][hapmap];0.88[JPT][hapmap]
rs7620948	0.80[CEU][hapmap]
rs7653685	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9309988	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9309989	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9844801	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9872327	1.00[CEU][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877108	chr3:85870363-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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