Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10511071	0.80[CEU][hapmap];0.86[GIH][hapmap]
rs10511072	0.80[CEU][hapmap]
rs12633350	0.81[EUR][1000 genomes]
rs13320771	0.84[EUR][1000 genomes]
rs13353526	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1448600	0.85[YRI][hapmap]
rs1448601	0.80[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17023228	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17023290	0.80[CEU][hapmap]
rs17023381	0.80[CEU][hapmap]
rs17334678	0.85[YRI][hapmap]
rs28720082	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2875528	0.80[CEU][hapmap];0.86[GIH][hapmap]
rs57266977	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57885949	0.80[EUR][1000 genomes]
rs59426471	0.82[EUR][1000 genomes]
rs6549051	0.85[YRI][hapmap]
rs73845624	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7616936	1.00[CEU][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs7644873	0.80[CEU][hapmap];0.90[GIH][hapmap];0.81[EUR][1000 genomes]
rs7653685	0.80[CEU][hapmap];0.86[GIH][hapmap]
rs7653871	0.85[EUR][1000 genomes]
rs9309988	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs9309989	0.80[CEU][hapmap]
rs9836492	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872327	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv460753	chr3:85789007-85820416	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv590911	chr3:85789007-85820416	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85784800-85793800	Weak transcription	Psoas Muscle	Psoas
2	chr3:85790200-85795200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:85791000-85792800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr3:85792000-85792600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:85792200-85793000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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