Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12633350	0.90[EUR][1000 genomes]
rs13320771	0.82[CHB][hapmap]
rs13353526	0.82[CEU][hapmap]
rs1448600	0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs17023228	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17023255	0.82[CEU][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17334678	0.86[YRI][hapmap]
rs2325026	0.80[AFR][1000 genomes]
rs28720082	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4519715	0.80[YRI][hapmap]
rs57266977	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57885949	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57967637	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59426471	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6549051	0.85[YRI][hapmap]
rs73845624	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7616936	0.80[CEU][hapmap]
rs7620948	0.80[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7644873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9836492	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85753200-85756800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:85753200-85756800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:85753200-85756800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:85753200-85757000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:85753600-85758600	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:85754400-85754800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:85754400-85755600	Enhancers	Brain Germinal Matrix	brain

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