Variant report

Variant	rs73845624
Chromosome Location	chr3:85758257-85758258
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12633350	0.90[EUR][1000 genomes]
rs1448600	0.81[AFR][1000 genomes]
rs1448601	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023228	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17023255	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2325026	0.81[AFR][1000 genomes]
rs28720082	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57266977	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57885949	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57967637	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59426471	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7620948	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7644873	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9836492	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85753600-85758600	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:85755600-85759200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:85756800-85758600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:85756800-85759200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:85757000-85759000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:85757000-85759200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:85757000-85759200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:85757200-85758800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:85757600-85759000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:85757800-85759000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:85758000-85758600	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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