Variant report

Variant	rs7644873
Chromosome Location	chr3:85720888-85720889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12633350	0.81[EUR][1000 genomes]
rs13320771	0.82[CHB][hapmap]
rs13353526	0.80[CEU][hapmap]
rs1448601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17023228	0.91[EUR][1000 genomes]
rs17023255	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs28720082	0.81[EUR][1000 genomes]
rs57266977	0.91[EUR][1000 genomes]
rs57885949	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57967637	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58879228	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs59426471	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6785555	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs73845624	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7616936	0.80[CEU][hapmap]
rs7620948	0.80[CEU][hapmap];0.90[GIH][hapmap];0.81[EUR][1000 genomes]
rs9819299	0.84[YRI][hapmap]
rs9836492	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877104	chr3:85646426-85737646	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85719600-85721000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:85719800-85721000	Enhancers	Brain Cingulate Gyrus	brain
3	chr3:85720000-85724600	Weak transcription	Brain Angular Gyrus	brain
4	chr3:85720200-85730400	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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