Variant report

Variant	rs2875528
Chromosome Location	chr3:85838491-85838492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10511071	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10511072	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs13320771	0.85[JPT][hapmap]
rs13353526	0.80[CEU][hapmap];0.88[JPT][hapmap]
rs17023255	0.80[CEU][hapmap]
rs17023290	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs17023381	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap]
rs7616936	0.80[CEU][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap]
rs7620948	0.80[CEU][hapmap];0.86[GIH][hapmap]
rs7653685	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap]
rs9309988	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9309989	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9844801	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap]
rs9872327	1.00[CEU][hapmap];0.88[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85832800-85839400	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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