Variant report

Variant	rs17023736
Chromosome Location	chr4:148660715-148660716
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148660544..148662110-chr4:148679159..148680950,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10305926	1.00[EUR][1000 genomes]
rs1105266	1.00[EUR][1000 genomes]
rs11933787	1.00[EUR][1000 genomes]
rs11934646	1.00[AMR][1000 genomes]
rs11939191	1.00[EUR][1000 genomes]
rs11940536	1.00[EUR][1000 genomes]
rs1503863	1.00[EUR][1000 genomes]
rs1517135	1.00[EUR][1000 genomes]
rs17023827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2036499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2036502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2358096	1.00[EUR][1000 genomes]
rs2718451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28551143	1.00[EUR][1000 genomes]
rs6535551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6824884	1.00[EUR][1000 genomes]
rs6848211	1.00[AMR][1000 genomes]
rs6854158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7663257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7673515	1.00[EUR][1000 genomes]
rs7681275	1.00[EUR][1000 genomes]
rs7699281	1.00[AMR][1000 genomes]
rs931779	1.00[EUR][1000 genomes]
rs9999853	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880242	chr4:148659137-148727355	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148655400-148662600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:148655400-148662600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr4:148655600-148662600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:148655600-148662800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:148655600-148681600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:148655800-148663400	Enhancers	Fetal Heart	heart
7	chr4:148655800-148665600	Weak transcription	Lung	lung
8	chr4:148656000-148662400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:148656600-148661800	Weak transcription	Fetal Lung	lung
10	chr4:148656600-148676800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:148656800-148662800	Weak transcription	Small Intestine	intestine
12	chr4:148656800-148675200	Weak transcription	Fetal Stomach	stomach
13	chr4:148657000-148663000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:148657000-148668600	Weak transcription	Gastric	stomach
15	chr4:148657400-148662800	Weak transcription	Esophagus	oesophagus
16	chr4:148657400-148668600	Weak transcription	Fetal Intestine Small	intestine
17	chr4:148657800-148662600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr4:148658000-148662200	Weak transcription	A549	lung
19	chr4:148658200-148660800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr4:148658200-148661200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:148658200-148661400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:148658200-148661400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:148658200-148661600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:148658200-148661800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:148658200-148662400	Weak transcription	HMEC	breast
26	chr4:148658200-148662600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr4:148658200-148662600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr4:148658200-148662600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr4:148658200-148663000	Weak transcription	HUVEC	blood vessel
30	chr4:148658200-148663200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr4:148658200-148665400	Weak transcription	Aorta	Aorta
32	chr4:148658200-148675000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr4:148658400-148662200	Weak transcription	NHEK	skin
34	chr4:148658800-148660800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr4:148658800-148663200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr4:148658800-148665400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr4:148659000-148662600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr4:148659000-148662800	Weak transcription	Right Atrium	heart
39	chr4:148659200-148661200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:148659200-148661800	Weak transcription	NHLF	lung
41	chr4:148659200-148662600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr4:148659200-148662600	Weak transcription	HSMMtube	muscle
43	chr4:148659200-148662600	Weak transcription	NH-A	brain
44	chr4:148659200-148662800	Weak transcription	Psoas Muscle	Psoas
45	chr4:148659200-148662800	Weak transcription	Right Ventricle	heart
46	chr4:148659200-148663000	Weak transcription	Adipose Nuclei	Adipose
47	chr4:148659200-148665200	Weak transcription	Fetal Muscle Leg	muscle
48	chr4:148659200-148668000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr4:148659400-148662000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr4:148659400-148662600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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