Variant report

Variant	rs2036499
Chromosome Location	chr4:148537310-148537311
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10003944	1.00[EUR][1000 genomes]
rs10012917	1.00[EUR][1000 genomes]
rs10017079	1.00[EUR][1000 genomes]
rs10019644	1.00[EUR][1000 genomes]
rs10020557	1.00[EUR][1000 genomes]
rs10024734	1.00[EUR][1000 genomes]
rs10031628	1.00[EUR][1000 genomes]
rs10032638	1.00[EUR][1000 genomes]
rs10305926	1.00[EUR][1000 genomes]
rs1105266	1.00[EUR][1000 genomes]
rs11933787	1.00[EUR][1000 genomes]
rs11934646	1.00[AMR][1000 genomes]
rs11935436	1.00[EUR][1000 genomes]
rs11939191	1.00[EUR][1000 genomes]
rs11940536	1.00[EUR][1000 genomes]
rs1503863	1.00[EUR][1000 genomes]
rs1517135	1.00[EUR][1000 genomes]
rs17023736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17023827	1.00[AMR][1000 genomes]
rs2036502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2358096	1.00[EUR][1000 genomes]
rs2718451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28551143	1.00[EUR][1000 genomes]
rs6535551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6824884	1.00[EUR][1000 genomes]
rs6848211	1.00[AMR][1000 genomes]
rs6854158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7663257	1.00[AMR][1000 genomes]
rs7673515	1.00[EUR][1000 genomes]
rs7681275	1.00[EUR][1000 genomes]
rs9308219	1.00[EUR][1000 genomes]
rs9308220	1.00[EUR][1000 genomes]
rs9308221	1.00[EUR][1000 genomes]
rs931779	1.00[EUR][1000 genomes]
rs9884319	1.00[EUR][1000 genomes]
rs9884495	1.00[EUR][1000 genomes]
rs9997823	1.00[EUR][1000 genomes]
rs9999853	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830110	chr4:148432125-148595119	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv428776	chr4:148432125-148595119	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1019205	chr4:148524852-148576265	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148519200-148538000	Weak transcription	Aorta	Aorta
2	chr4:148521400-148538000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:148527000-148537600	Weak transcription	Brain Anterior Caudate	brain
4	chr4:148527200-148538000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:148529600-148537600	Weak transcription	HepG2	liver
6	chr4:148532600-148537600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:148532800-148538000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:148534000-148537600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:148535400-148537400	Weak transcription	Pancreas	Pancrea
10	chr4:148535400-148538200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:148537200-148539800	Active TSS	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links