Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148618368..148620022-chr4:148621167..148623784,2	MCF-7	breast:
2	chr4:148616867..148618496-chr4:148626257..148629156,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10003944	1.00[EUR][1000 genomes]
rs10012917	1.00[EUR][1000 genomes]
rs10017079	1.00[EUR][1000 genomes]
rs10020557	1.00[EUR][1000 genomes]
rs10024734	1.00[EUR][1000 genomes]
rs10031628	1.00[EUR][1000 genomes]
rs10305926	1.00[EUR][1000 genomes]
rs1105266	1.00[EUR][1000 genomes]
rs11933787	1.00[EUR][1000 genomes]
rs11934646	1.00[AMR][1000 genomes]
rs11935436	1.00[EUR][1000 genomes]
rs11939191	1.00[EUR][1000 genomes]
rs11940536	1.00[EUR][1000 genomes]
rs1503863	1.00[EUR][1000 genomes]
rs1517135	1.00[EUR][1000 genomes]
rs17023736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17023827	1.00[AMR][1000 genomes]
rs2036499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2036502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2358096	1.00[EUR][1000 genomes]
rs2654947	0.91[YRI][hapmap]
rs2718451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28551143	1.00[EUR][1000 genomes]
rs6535547	1.00[YRI][hapmap]
rs6535551	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6824884	1.00[EUR][1000 genomes]
rs6848211	1.00[AMR][1000 genomes]
rs7663257	1.00[AMR][1000 genomes]
rs7673515	1.00[EUR][1000 genomes]
rs7681275	1.00[EUR][1000 genomes]
rs7699281	1.00[AMR][1000 genomes]
rs9308219	1.00[EUR][1000 genomes]
rs9308220	1.00[EUR][1000 genomes]
rs9308221	1.00[EUR][1000 genomes]
rs931779	1.00[EUR][1000 genomes]
rs9884319	1.00[EUR][1000 genomes]
rs9884495	1.00[EUR][1000 genomes]
rs9997823	1.00[EUR][1000 genomes]
rs9999853	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148617600-148618600	Enhancers	Placenta	Placenta
2	chr4:148618000-148618600	Enhancers	NHEK	skin

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